scaden_predict: Predict cell proportions
In PelzKo/immunedeconv2: Second generation methods for immune cell deconvolution
scaden_predict R Documentation
Predict cell proportions
Description
Predicts cell proportions in bulk RNA sample.
Usage
scaden_predict(
model_dir,
bulk_gene_expression,
temp_dir = NULL,
verbose = FALSE
)
Arguments
model_dir
Directory where model is saved
bulk_gene_expression
Bulk RNA-seq data. (genes x bulk_RNA samples)
temp_dir
The temporary directory to use for the computations (optional)
verbose
Whether to produce an output on the console. (default: false)
Value
Cell type fractions per sample
PelzKo/immunedeconv2 documentation built on Feb. 12, 2025, 4:16 p.m.
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| scaden_predict | R Documentation |
Predict cell proportions
Description
Predicts cell proportions in bulk RNA sample.
Usage
scaden_predict(
model_dir,
bulk_gene_expression,
temp_dir = NULL,
verbose = FALSE
)
Arguments
model_dir |
Directory where model is saved |
bulk_gene_expression |
Bulk RNA-seq data. (genes x bulk_RNA samples) |
temp_dir |
The temporary directory to use for the computations (optional) |
verbose |
Whether to produce an output on the console. (default: false) |
Value
Cell type fractions per sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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