Man pages for PengNi/dSimer
Integration of Disease Similarity Methods
| BOG | calculate disease similarity by BOG |
| CosineDFV | calculate disease similarity by using feature vectors |
| d2g_fundo_entrezid | d2g_fundo_entrezid |
| d2g_fundo_symbol | d2g_fundo_symbol |
| d2go_sample | d2go_sample |
| d2g_separation | d2g_separation |
| d2s_hsdn | d2s_hsdn |
| d2s_hsdn_sample | d2s_hsdn_sample |
| dSimer-package | Integration of Disease Similarity Methods |
| FunSim | calculate disease similarity by FunSim |
| get_GOterm2GeneAssos | get GO-gene associations |
| go2g_sample | go2g_sample |
| graphlet_sig_hprd | graphlet_sig_hprd |
| HumanNet_sample | HumanNet_sample |
| HypergeometricTest | Hypergeometric test and multiple testing |
| ICod | calculate disease similarity by ICod |
| InformationContent | calculating information content |
| interactome | interactome |
| jaccardindex | calculating Jaccard Index |
| LLSn2List | convert data.frame of HumanNet log-likelihood Score to list |
| Normalize | normalize data |
| orbit_dependency_count | orbit_dependency_count |
| plot_bipartite | plot disease-gene (or GO term etc.) associations as a... |
| plot_heatmap | similarity matrix heatmap plotting |
| plot_net | plot a network based on a symmetric disease similarity matrix |
| plot_topo | plot topological relationship of two gene sets |
| PPI_HPRD | PPI_HPRD |
| PSB | calculate disease similarity by PSB |
| Separation | calculating network-based separation of disease pairs |
| Separation2Similarity | a method which convert separation to similarity |
| setWeight | set weight factor |
| Sun_annotation | Sun's annotation measure of disease similarity calculating |
| Sun_function | Sun's function measure of disease similarity calculating |
| Sun_topology | Sun's topology measure of disease similarity calculating |
| weight | weight |
| x2y_conv2_y2x | convert x2ylist to y2xlist |
| x2y_df2list | convert x-y associations |
