HypergeometricTest: Hypergeometric test and multiple testing

Description Usage Arguments Value Author(s) See Also Examples

Description

given disease-gene associations and go-gene associations, return disease-go associations by using hypergeometric test and fdr mulitiple testing

Usage

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HypergeometricTest(d2g, go2g, method = "BH", cutoff = 0.05)

Arguments

d2g

a list of disease-gene associations

go2g

a list of GOterm-gene associations

method

multiple testing method, the same as parameter in method p.adjust

cutoff

multiple testing cut off value

Value

a list of disease-GO term associations

Author(s)

Peng Ni, Min Li

See Also

PSB, Sun_function, get_GOterm2GeneAssos

Examples

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## see more examples in function PSB or Sun_function
data(d2go_sample)
data(go2g_sample)
data(d2g_fundo_symbol)
HypergeometricTest(d2g_fundo_symbol[names(d2go_sample)],go2g_sample)

PengNi/dSimer documentation built on May 8, 2019, 1:28 a.m.