Files in PengyiYang/PhosR
A set of methods and tools for comprehensive analysis of phosphoproteomics data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
PhosR.Rproj
R/.Rproj.user/AB2B56/console06/INDEX001
R/.Rproj.user/AB2B56/pcs/files-pane.pper
R/.Rproj.user/AB2B56/pcs/source-pane.pper
R/.Rproj.user/AB2B56/pcs/windowlayoutstate.pper
R/.Rproj.user/AB2B56/pcs/workbench-pane.pper
R/.Rproj.user/AB2B56/rmd-outputs
R/.Rproj.user/AB2B56/saved_source_markers
R/.Rproj.user/shared/notebooks/patch-chunk-names
R/Impute.R
R/RUVs.R
R/Signalomes.R
R/data.R
R/filter.R
R/getMotifFreq.R
R/kinaseSubstratePrediction.R
R/pathwayAnalysis.R
R/plotQC.R
R/toolBox.R
README.md
_pkgdown.yml
data/KinaseFamily.rda
data/KinaseMotifs.rda
data/Pathways.rda
data/PhosphoSitePlus.rda
data/SPSs.rda
data/phospho.cells.Ins.sample.rda
data/phospho_L6_ratio.RData
data/phospho_liverInsTC_RUV_sample.rda
graphical_abstract.png
inst/graphical_abstract.png
man/KinaseFamily.Rd
man/Pathways.KEGG.Rd
man/Pathways.reactome.Rd
man/PhosphoSite.human.Rd
man/PhosphoSite.mouse.Rd
man/PhosphoSite.rat.Rd
man/RUVphospho.Rd
man/SPSs.Rd
man/Signalomes.Rd
man/createFrequencyMat.Rd
man/frequencyScoring.Rd
man/kinaseSubstrateHeatmap.Rd
man/kinaseSubstratePred.Rd
man/kinaseSubstrateProfile.Rd
man/kinaseSubstrateScore.Rd
man/mIntersect.Rd
man/matANOVA.Rd
man/meanAbundance.Rd
man/medianScaling.Rd
man/minmax.Rd
man/motif.human.list.Rd
man/motif.mouse.list.Rd
man/motif.rat.list.Rd
man/pathwayOverrepresent.Rd
man/pathwayRankBasedEnrichment.Rd
man/phosCollapse.Rd
man/phospho.L6.ratio.Rd
man/phospho.cells.Ins.Rd
man/phospho.liver.Ins.TC.ratio.RUV.Rd
man/plotQC.Rd
man/ptImpute.Rd
man/scImpute.Rd
man/selectGrps.Rd
man/selectOverallPercent.Rd
man/selectTimes.Rd
man/siteAnnotate.Rd
man/standardise.Rd
man/tImpute.Rd
tests/testthat.R
tests/testthat/test-RUVs.R
tests/testthat/test-filter.R
tests/testthat/test-impute.R
tests/testthat/test-pathwayAnalysis.R
tests/testthat/test-plotQC.R
vignettes/PhosR.Rmd
