generate_spm_contrasts: This function reads an SPM.mat file and generate contrasts...

In PennStateDEPENdLab/dependlab: Useful functions for the UNC Chapel Hill DEPENd Lab (Director: Michael Hallquist)

This function reads an SPM.mat file and generate contrasts based on the design matrix specification

Description

This function reads an SPM.mat file and generate contrasts based on the design matrix specification

Usage

generate_spm_contrasts(
  output_dir,
  condition_contrasts = TRUE,
  unit_contrasts = TRUE,
  effects_of_interest_F = TRUE,
  spm_path = "/gpfs/group/mnh5174/default/lab_resources/spm12",
  execute = FALSE
)

Arguments

output_dir	location for SPM outputs and scripts for estimating contrasts. Must contain SPM.mat already
condition_contrasts	see generate_spm_mat
unit_contrasts	see generate_spm_mat
effects_of_interest_F	see generate_spm_mat
spm_path	see generate_spm_mat
execute	whether to run contrast setup. This depends on SPM.mat having been created already. Default: FALSE

Author(s)

Michael Hallquist

PennStateDEPENdLab/dependlab documentation built on April 10, 2024, 5:15 p.m.