Man pages for PennStateDEPENdLab/dependlab
Useful functions for the Penn State DEPENd Lab (Director: Michael Hallquist)

build_design_matrixCreates an fmri design matrix, including timing files for for...
cleanup_regressorSmall utility function to handle any NAs in the regressor...
concat_design_runsConcatenate design matrices for each run to form a single...
convolve_regressorHelper function used by the summed runs and separate runs...
cor_heatmapFunction to generate ggplot correlation heatmap
cor_with_targetThis function correlates a set of target variables (target)...
dependlabUseful functions for the Penn State DEPENd Lab (Director:...
detrendtsDetrend a time series up to quadratic trend. Used by...
example_eventsexample events structure for build_design_matrix
example_nuisrun1example nuisance regressors for run1 used in...
example_nuisrun2example nuisance regressors for run2 used in...
example_signalsexample signals structure for build_design_matrix
fir1BandpassApply a FIR-1 bandpass filter a signal. Can low- or high-pass...
fmri.stimulusConvolve a regressor with a hemodynamic response function for...
generate_fsf_contrast_syntaxThis function generates syntax for FSL Feat .fsf files for...
generate_fsf_ev_syntaxThis function generates syntax for FSL Feat .fsf files for...
hrf_convolve_normalizeThis function convolves a regressor with a normalized HRF...
lmer_predictThis function predicts outcome variable from a (g)lmer object...
mean_impute_itemsFunction to impute the mean for missing items on a per-case...
place_dmat_on_time_gridFunction to convert dmat (runs x regressor list) to a...
qsub_fileThis function submits a single script using the qsub command....
rat.brainrat.brain data in Chapter 5 of West, Welch, and Galecki...
runmeancompute a moving average smooth over a time series (here, a...
score_dasScores the Dyadic Adjustment Scale (Spanier 1976) This is for...
score_ecrScore the experiences in close relationships - revised...
visualize_design_matrixVisualize design matrix, including event onset times and run...
wait_for_jobThis function pauses execution of an R script while a...
PennStateDEPENdLab/dependlab documentation built on Nov. 10, 2018, 10:17 a.m.