PeteHaitch/methsim: An R package to simulate DNA methylation data

methsim is software to simulate DNA methylation sequencing data. methsim can currently simulate data from bisulfite-sequencing assays such as methylC-seq or BS-seq. It uses a non-stationary, inhomogeneous Markov model. This model can incorporate the strong spatial dependence of DNA methylation. Simulation parameters can be estimated from data or specified by the user.

Getting started

Package details

AuthorPeter Hickey <[email protected]>
Bioconductor views DNAMethylation MethylSeq Software
MaintainerPeter Hickey <[email protected]>
LicenseGPL (>= 2)
Version0.5.0.9013
URL www.github.com/PeteHaitch/methsim
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("PeteHaitch/methsim")
PeteHaitch/methsim documentation built on May 8, 2019, 1:32 a.m.