funByPM: Apply a function to a 'MethylationTuples::MethPat' object,...

In PeteHaitch/methsim: An R package to simulate DNA methylation data

Description

Apply a function to a MethylationTuples::MethPat object, with results stratified by the region type of the accompanying PartitionedMethylome.

Usage

funByPM(FUN, pm, methpat, min_cov, ...)

Arguments

FUN	The function to be applied to each element of pm: see 'Details'. Only a limited number of functions are currently supported, specifically MethylationTuples::methLevel(), MethylationTuples::cometh(), and MethylationTuples::patternFreqs().
pm	A PartitionedMethylome object.
methpat	A MethylationTuples::MethPat object.
min_cov	An integer specifying the minimum coverage required in order to use an m-tuple in the analysis.
...	Optional arguments to FUN.

Value

A data.table::data.table.

PeteHaitch/methsim documentation built on May 8, 2019, 1:32 a.m.