Files in PhanstielLab/plotgardener

Coordinate-Based Genomic Visualization Package for R

.github/ISSUE_TEMPLATE/bug_report.md LICENSE.md NEWS.md R/RcppExports.R R/annoDomains.R R/annoGenomeLabel.R R/annoHeatmapLegend.R R/annoHighlight.R R/annoPixels.R R/annoSegments.R R/annoText.R R/annoXaxis.R R/annoYaxis.R R/annoZoomLines.R R/assembly.R R/assemblyFunctions.R R/colorby.R R/defaultPackages.R R/genomes.R R/getExons.R R/hicFunctions.R R/mapColors.R R/pageCreate.R R/pageGuideHide.R R/pageGuideHorizontal.R R/pageGuideShow.R R/pageGuideVertical.R R/pageLayout.R R/pagePlotPlace.R R/pagePlotRemove.R R/parameterFunctions.R R/pgEnv.R R/pgParams.R R/placementFunctions.R R/plotBase.R R/plotCircle.R R/plotGG.R R/plotGenes.R R/plotGenomeLabel.R R/plotHicRectangle.R R/plotHicSquare.R R/plotHicTriangle.R R/plotIdeogram.R R/plotLegend.R R/plotManhattan.R R/plotMultiSignal.R R/plotPairs.R R/plotPairsArches.R R/plotPolygon.R R/plotRanges.R R/plotRaster.R R/plotRect.R R/plotSegments.R R/plotSignal.R R/plotText.R R/plotTranscripts.R R/plotgardener.R R/readBigwig.R R/readHic.R R/readingFunctions.R R/viewportFunctions.R R/zzz.R README.md inst/script/fonts.R man/annoDomains.Rd man/annoGenomeLabel.Rd man/annoHeatmapLegend.Rd man/annoHighlight.Rd man/annoPixels.Rd man/annoSegments.Rd man/annoText.Rd man/annoXaxis.Rd man/annoYaxis.Rd man/annoZoomLines.Rd man/assembly.Rd man/c.Rd man/calcSignalRange.Rd man/colorby.Rd man/defaultPackages.Rd man/genomes.Rd man/mapColors.Rd man/pageCreate.Rd man/pageGuideHide.Rd man/pageGuideHorizontal.Rd man/pageGuideShow.Rd man/pageGuideVertical.Rd man/pageLayoutCol.Rd man/pageLayoutRow.Rd man/pagePlotPlace.Rd man/pagePlotRemove.Rd man/pgParams.Rd man/plotCircle.Rd man/plotGG.Rd man/plotGenes.Rd man/plotGenomeLabel.Rd man/plotHicRectangle.Rd man/plotHicSquare.Rd man/plotHicTriangle.Rd man/plotIdeogram.Rd man/plotLegend.Rd man/plotManhattan.Rd man/plotMultiSignal.Rd man/plotPairs.Rd man/plotPairsArches.Rd man/plotPolygon.Rd man/plotRanges.Rd man/plotRaster.Rd man/plotRect.Rd man/plotSegments.Rd man/plotSignal.Rd man/plotText.Rd man/plotTranscripts.Rd man/plotgardener.Rd man/readBigwig.Rd man/readHic.Rd tests/testthat.R tests/testthat/test-assemblyFunctions.R tests/testthat/test-colorby.R tests/testthat/test-hicFunctions.R tests/testthat/test-parameterFunctions.R tests/testthat/test-pgParams.R tests/testthat/test-placementFunctions.R tests/testthat/test-plotting.R tests/testthat/test-readingFunctions.R tests/testthat/test-signalFunctions.R tests/testthat/test-viewports.R vignettes/guides/aesthetics.Rmd vignettes/guides/annotations.Rmd vignettes/guides/bioconductor_integration.Rmd vignettes/guides/ideograms_and_shapes.Rmd vignettes/guides/incorporating_ggplots.Rmd vignettes/guides/our_philosophy.Rmd vignettes/guides/plotgardener_meta_functions.Rmd vignettes/guides/plotgardener_page.Rmd vignettes/guides/plotting_multiomic_data.Rmd vignettes/guides/reading_data_for_plotgardener.Rmd vignettes/introduction_to_plotgardener.Rmd