Files in Pinlyu3/LRLoop
Two-way communication between cells
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DESCRIPTION
Figures/CircosPlot_L1R1_ct1toct2.png
Figures/CircosPlot_L2R2_ct2toct1.png
Figures/LRLoops1.png
Figures/LRloop_network_sub.png
Figures/LRloop_network_sub_heatmap_labeled.png
Figures/heatmap_L1R1_ct1toct2_nonescale.png
Figures/heatmap_L2R2_ct2toct1_nonescale.png
LICENSE.md
LRLoop.Rproj
NAMESPACE
R/CircosPlot.R
R/CircosPlot2.R
R/L1R1L2R2ScoreHill.R
R/L1R1L2R2Scores.R
R/LRL_info_collection.R
R/LRL_stats.R
R/LRscores.R
R/MostBasicLRinfo.R
R/PrepareBasics.R
R/apply_hub_corrections_noligand.R
R/construct_receptor_target_matrix.R
R/construct_receptor_tf_matrix.R
R/construct_tf_target_matrix_noligand.R
R/getLRLoopPartnerInfo.R
R/getLRscoreupdated_cutoff.R
R/get_DEG.R
R/get_LRL.R
R/get_LRscores.R
R/get_expr_lr.R
R/get_pct_expr.R
R/getnLRloops_rand.R
R/make_LRL_list.R
R/make_discrete_ligand_target_matrix_general.R
R/plotLRL.R
R/print_LRL_Score_options.R
R/takeNicheNetScores.R
R/take_LR_expr_score.R
R/updateLRscores.R
R/updateLRscores_rand.R
R/writeLRL.R
README.md
man/Circos_plot.Rd
man/Circos_plot_2.Rd
man/L1R1L2R2Score.Rd
man/L1R1L2R2ScoreHill.Rd
man/LRL_info_collection.Rd
man/LRL_stats.Rd
man/LRscore.Rd
man/MostBasicLRinfo.Rd
man/PrepareBasics.Rd
man/apply_hub_corrections_noligand.Rd
man/construct_receptor_target_matrix.Rd
man/construct_receptor_tf_matrix.Rd
man/construct_tf_target_matrix_noligand.Rd
man/getLRLoopPartnerInfo.Rd
man/getLRscoreupdated_cutoff.Rd
man/get_DEG.Rd
man/get_LRL.Rd
man/get_LRscores.Rd
man/get_expr_lr.Rd
man/get_pct_expr.Rd
man/getnLRloops_rand.Rd
man/make_LRL_list.Rd
man/make_discrete_ligand_target_matrix_general.Rd
man/plotLRL.Rd
man/print_LRL_Score_options.Rd
man/takeNicheNetScores.Rd
man/take_LR_expr_score.Rd
man/updateLRscores.Rd
man/updateLRscores_rand.Rd
man/writeLRL.Rd
vignettes/CircosPlot_L1R1_ct1toct2.png
vignettes/CircosPlot_L2R2_ct2toct1.png
vignettes/Custom_GRNs.md
vignettes/L1R1_kmeanscluster.png
vignettes/L2R2_kmeanscluster.png
vignettes/LRloop_network_sub.png
vignettes/LRloop_network_sub_heatmap_labeled.png
vignettes/Main.md
vignettes/heatmap_L1R1_ct1toct2_nonescale.png
vignettes/heatmap_L1R1_ct1toct2_rowscale.png
vignettes/heatmap_L2R2_ct2toct1_nonescale.png
vignettes/heatmap_L2R2_ct2toct1_rowscale.png
vignettes/kmeanscluster_DEG_ct1.png
vignettes/kmeanscluster_DEG_ct2.png
