Circos_plot_2: Circos plot 2
In Pinlyu3/LRLoop: Two-way communication between cells

Circos plot 2

CircosPlot2(
  LRscorematrix,
  LRscore_conditions,
  L_cluster,
  R_cluster,
  LR_cluster,
  WhichLRscore,
  color_L,
  color_R,
  color_LR,
  width_same_ligand_cluster,
  width_different_ligand_cluster,
  width_ligand_receptor,
  width_same_receptor_cluster,
  width_different_receptor_cluster,
  cplotthresh,
  cex
)

`LRscorematrix`	A matrix with columns "ligand", "receptor" and the condition names where the condition columns contain the LRscores of each ligand-receptor pairs in each condition.
`LRscore_conditions`	A vector of conditions to be used when calculating the maximum or mean LR expr_score for each LR pair acorss conditions
`L_cluster`	The predefined vectors of L, R and LRpair clusters.
`R_cluster`	The predefined vectors of L, R and LRpair clusters.
`LR_cluster`	The predefined vectors of L, R and LRpair clusters.
`WhichLRscore`	The LR expr_score to be used in the plot, which is 'LRscore_max' (for each LR pair, the maximum LR expr_score across LRscore_conditions) or 'LRscore_mean' (for each LR pair, the average LR expr_score across LRscore_conditions).
`color_L`	A vector of colors of the ligand clusters, with the name of each element the name of the corresponding cluster
`color_R`	A vector of colors of the receptor clusters, with the name of each element the name of the corresponding cluster
`color_LR`	A vector of colors of the LR clusters, with the name of each element the name of the corresponding cluster
`width_same_ligand_cluster`	Gap width between ligand nodes in the same cluster
`width_different_ligand_cluster`	Gap width between different ligand clusters
`width_ligand_receptor`	Gap width between the ligand nodes and the receptor nodes
`width_same_receptor_cluster`	Gap width between receptor nodes in the same cluster
`width_different_receptor_cluster`	Gap width between different receptor clusters
`cplotthresh`	A number. Only plot L-R edges in the circos plot with LRscore > cplotthresh
`cex`	Font size