Circos_plot: Circos plot
In Pinlyu3/LRLoop: Two-way communication between cells

Circos plot

CircosPlot(
  LRscorematrix,
  LRscore_conditions,
  LRloop_info,
  Ligand,
  Receptor,
  WhichLRscore,
  color_L,
  color_R,
  color_LR,
  width_same_ligand_cluster,
  width_different_ligand_cluster,
  width_ligand_receptor,
  width_same_receptor_cluster,
  width_different_receptor_cluster,
  cplotthresh,
  cex
)

`LRscorematrix`	A matrix with columns "ligand", "receptor" and the condition names where the condition columns contain the LRscores of each ligand-receptor pairs in each condition
`LRscore_conditions`	A vector of conditions to be used when calculating the maximum or mean LR expr_score for each LR pair acorss conditions
`LRloop_info`	The list of collected info on the LRloop_network of interest resulted from the function "LRL_info_collection"
`Ligand`	'L1' or 'L2'.
`Receptor`	'R1' or 'R2'. Remark: Ligand and Receptor should be set in pairs as either Ligand = "L1", Receptor = "R1", or Ligand = "L2", Receptor = "R2"
`WhichLRscore`	The LR expr_score to be used in the plot, which is 'LRscore_max' (for each LR pair, the maximum LR expr_score across LRscore_conditions) or 'LRscore_mean' (for each LR pair, the average LR expr_score across LRscore_conditions)
`color_L`	A vector of colors of the ligand clusters, with the name of each element the name of the corresponding cluster
`color_R`	A vector of colors of the receptor clusters, with the name of each element the name of the corresponding cluster
`color_LR`	A vector of colors of the LR clusters, with the name of each element the name of the corresponding cluster
`width_same_ligand_cluster`	Gap width between ligand nodes in the same cluster
`width_different_ligand_cluster`	Gap width between different ligand clusters
`width_ligand_receptor`	Gap width between the ligand nodes and the receptor nodes
`width_same_receptor_cluster`	Gap width between receptor nodes in the same cluster
`width_different_receptor_cluster`	Gap width between different receptor clusters
`cplotthresh`	A number. Only plot L-R edges in the circos plot with LRscore > cplotthresh
`cex`	Font size