plotLRL: Plot the LRloop network (A_ and B_ in the LR node lables:...

In Pinlyu3/LRLoop: Two-way communication between cells

Description

Plot the LRloop network (A_ and B_ in the LR node lables: Distinguish ligand-from-ct1_receptor-in-ct2 pairs from ligand-from-ct2_receptor-in-ct1 pairs)

Usage

plotLRL(
  LRloop_info,
  WhichL1R1L2R2Score,
  nodecolors,
  labelcolor,
  nodesize,
  edgecutoff,
  labelsize,
  edgecolor,
  pheatmapcolor,
  pheatmap_dist
)

Arguments

LRloop_info	The list of the LRloop_network info calculated by function "LRL_info_collection"
WhichL1R1L2R2Score	Run the function "print_LRL_Score_options" first to check available options
nodecolors	Colors of the A_L1_R1 and B_L2_R2 type nodes in a vector of length two
labelcolor	Label text color
nodesize	Node size
edgecutoff	Only plot edges with L1R1L2R2 LRloopScore greater than edgecutoff
labelsize	Node label size
edgecolor	Edge color
pheatmapcolor	Value of pheatmap variable 'color'
pheatmap_dist	Value of pheatmap variables 'clustering_distance_rows' and 'clustering_distance_cols'. e.g. 'correlation', 'euclidean'

Pinlyu3/LRLoop documentation built on Jan. 7, 2022, 3:04 p.m.