API for Pitithat-pu/cfdnakit
Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)
| Global functions | |
|---|---|
| %>% | Man page |
| GRCh2UCSCGRanges | Man page |
| UCSC2GRChSampleBam | Man page |
| calculate_CES_score | Man page Source code |
| calculate_SLRatio_zscore | Source code |
| call_cnv | Man page Source code |
| cfdnakit | Man page |
| cfdnakit-package | Man page |
| create_PoN | Man page Source code |
| create_blacklist_gr | Man page Source code |
| extract_insert_size | Man page Source code |
| extract_read_ontarget | Source code |
| filter_read_on_blacklist | Man page Source code |
| fragment_dist | Man page Source code |
| get_fragment_profile | Man page Source code |
| get_segment_bysolution | Man page Source code |
| get_solution_table | Man page Source code |
| get_zscore_profile | Man page Source code |
| getmode | Source code |
| if_exist_baifile | Man page Source code |
| if_ucsc_chrformat | Man page Source code |
| imply_binsize | Source code |
| make_density_table | Man page Source code |
| overlap_bin_with_segment | Man page Source code |
| plot_cnv_solution | Man page Source code |
| plot_distance_matrix | Man page Source code |
| plot_fragment_dist | Man page Source code |
| plot_sl_ratio | Man page Source code |
| plot_transformed_sl | Man page Source code |
| read_PoN_files | Man page Source code |
| read_bamfile | Man page Source code |
| segmentByPSCB | Man page Source code |
| test_isize_KolmogorovSmirnov | Man page Source code |
| util.bias_correct | Man page Source code |
| util.get_chrLength_info | Source code |
| util.get_sliding_windows | Source code |
| util.rowname_to_columns | Source code |
| zscore_transform | Man page Source code |
