fragment_dist: Get insert-size distribution table

In Pitithat-pu/cfdnakit: Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)

Get insert-size distribution table

Description

Get insert-size distribution table

Usage

fragment_dist(readbam_bin, maximum_length = 600, minimum_length = 20)

Arguments

readbam_bin	SampleBam Object from function read_bamfile
maximum_length	Int; Maximum length of fragment. cfDNA fragment longer than this value will not be considered; Default 600
minimum_length	Int; Minimum length of fragment. cfDNA fragment shorter than this value will not be considered; Default 20

Value

Distribution table of fragment length

Pitithat-pu/cfdnakit documentation built on April 5, 2024, 8:50 p.m.