filter_read_on_blacklist: Filter out reads on blacklist regions
In Pitithat-pu/cfdnakit: Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)
filter_read_on_blacklist R Documentation
Filter out reads on blacklist regions
Description
Filter out reads on blacklist regions
Usage
filter_read_on_blacklist(sample_bin, blacklist_files = NULL, genome = "hg19")
Arguments
sample_bin
SampleBam; Object from function read_bamfile
blacklist_files
Character; Filepath to file containing blacklist regions
genome
Character; Abbreviation of reference genome; Either hg19 or mm10. default:hg19
Value
SampleBam after filtering out read on balck list regions
Pitithat-pu/cfdnakit documentation built on April 5, 2024, 8:50 p.m.
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| filter_read_on_blacklist | R Documentation |
Filter out reads on blacklist regions
Description
Filter out reads on blacklist regions
Usage
filter_read_on_blacklist(sample_bin, blacklist_files = NULL, genome = "hg19")
Arguments
sample_bin |
SampleBam; Object from function read_bamfile |
blacklist_files |
Character; Filepath to file containing blacklist regions |
genome |
Character; Abbreviation of reference genome; Either hg19 or mm10. default:hg19 |
Value
SampleBam after filtering out read on balck list regions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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