| .BayesSpikeSolver |
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| .CandidateFilter |
Man page
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| .EnsembleSolver |
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| .FootprintFilter |
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| .FootprintFinder |
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| .GeneOntologyFilter |
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| .HumanDHSFilter |
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| .LassoPVSolver |
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| .LassoSolver |
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| .MotifMatcher |
Man page
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| .PearsonSolver |
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| .RandomForestSolver |
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| .RidgeSolver |
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| .Solver |
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| .SpearmanSolver |
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| .SqrtLassoSolver |
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| .Trena |
Man page
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| .VarianceFilter |
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| BayesSpikeSolver |
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| BayesSpikeSolver-class |
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| CandidateFilter |
Man page
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| CandidateFilter-class |
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| EnsembleSolver |
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| EnsembleSolver-class |
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| FootprintFilter |
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| FootprintFilter-class |
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| FootprintFinder |
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| FootprintFinder-class |
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| GeneOntologyFilter |
Man page
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| GeneOntologyFilter-class |
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| HumanDHSFilter |
Man page
Man page
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| HumanDHSFilter-class |
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| LassoPVSolver |
Man page
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| LassoPVSolver-class |
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| LassoSolver |
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| LassoSolver-class |
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| MotifMatcher |
Man page
Man page
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| MotifMatcher-class |
Man page
Man page
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| PearsonSolver |
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| PearsonSolver-class |
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| RandomForestSolver |
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| RandomForestSolver-class |
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| RidgeSolver |
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| RidgeSolver-class |
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| Solver |
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| Solver-class |
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| SpearmanSolver |
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| SpearmanSolver-class |
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| SqrtLassoSolver |
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| SqrtLassoSolver-class |
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| Trena |
Man page
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| Trena-class |
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| VarianceFilter |
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| VarianceFilter-class |
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| assessSnp |
Man page
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| assessSnp,Trena-method |
Man page
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| closeDatabaseConnections |
Man page
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| closeDatabaseConnections,FootprintFinder-method |
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| createGeneModel |
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| createGeneModel,Trena-method |
Man page
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| findMatchesByChromosomalRegion |
Man page
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| findMatchesByChromosomalRegion,MotifMatcher-method |
Man page
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| getAssayData |
Man page
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| getAssayData,Solver-method |
Man page
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| getAvailableSolvers |
Man page
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| getCandidates |
Man page
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| getCandidates,FootprintFilter-method |
Man page
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| getCandidates,GeneOntologyFilter-method |
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| getCandidates,HumanDHSFilter-method |
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| getCandidates,VarianceFilter-method |
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| getCandidates-FootprintFilter |
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| getCandidates-GeneOntologyFilter |
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| getCandidates-HumanDHSFilter |
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| getCandidates-VarianceFilter |
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| getChromLoc |
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| getChromLoc,FootprintFinder-method |
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| getEncodeRegulatoryTableNames |
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| getEncodeRegulatoryTableNames,HumanDHSFilter-method |
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| getFootprintsForGene |
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| getFootprintsForGene,FootprintFinder-method |
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| getFootprintsInRegion |
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| getFootprintsInRegion,FootprintFinder-method |
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| getGeneModelTableColumnNames |
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| getGeneModelTableColumnNames,Trena-method |
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| getGenePromoterRegion |
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| getGenePromoterRegion,FootprintFinder-method |
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| getGtfGeneBioTypes |
Man page
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| getGtfGeneBioTypes,FootprintFinder-method |
Man page
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| getGtfMoleculeTypes |
Man page
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| getGtfMoleculeTypes,FootprintFinder-method |
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| getPfms |
Man page
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| getPfms,MotifMatcher-method |
Man page
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| getPromoterRegionsAllGenes |
Man page
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| getPromoterRegionsAllGenes,FootprintFinder-method |
Man page
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| getProximalPromoter |
Man page
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| getProximalPromoter,Trena-method |
Man page
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| getRegulators |
Man page
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| getRegulators,Solver-method |
Man page
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| getRegulatoryChromosomalRegions |
Man page
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| getRegulatoryChromosomalRegions,Trena-method |
Man page
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| getRegulatoryRegions |
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| getRegulatoryRegions,HumanDHSFilter-method |
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| getRegulatoryTableColumnNames |
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| getRegulatoryTableColumnNames,Trena-method |
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| getSequence |
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| getSequence,MotifMatcher-method |
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| getSolverNames |
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| getSolverNames,EnsembleSolver-method |
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| getTarget |
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| getTarget,Solver-method |
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| parseChromLocString |
Man page
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| parseDatabaseUri |
Man page
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| rescalePredictorWeights |
Man page
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| rescalePredictorWeights,Solver-method |
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| run |
Man page
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| run,BayesSpikeSolver-method |
Man page
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| run,EnsembleSolver-method |
Man page
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| run,LassoPVSolver-method |
Man page
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| run,LassoSolver-method |
Man page
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| run,PearsonSolver-method |
Man page
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| run,RandomForestSolver-method |
Man page
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| run,RidgeSolver-method |
Man page
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| run,SpearmanSolver-method |
Man page
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| run,SqrtLassoSolver-method |
Man page
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| run.BayesSpikeSolver |
Man page
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| run.EnsembleSolver |
Man page
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| run.LassoPVSolver |
Man page
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| run.LassoSolver |
Man page
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| run.PearsonSolver |
Man page
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| run.RandomForestSolver |
Man page
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| run.RidgeSolver |
Man page
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| run.SpearmanSolver |
Man page
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| run.SqrtLassoSolver |
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| show,BayesSpikeSolver-method |
Man page
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| show,EnsembleSolver-method |
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| show,HumanDHSFilter-method |
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| show,LassoPVSolver-method |
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| show,LassoSolver-method |
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| show,MotifMatcher-method |
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| show,PearsonSolver-method |
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| show,RandomForestSolver-method |
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| show,RidgeSolver-method |
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| show,SpearmanSolver-method |
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| show,SqrtLassoSolver-method |
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| show-HumanDHSFilter |
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| show.BayesSpikeSolver |
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| show.EnsembleSolver |
Man page
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| show.LassoPVSolver |
Man page
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| show.LassoSolver |
Man page
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| show.MotifMatcher |
Man page
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| show.PearsonSolver |
Man page
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| show.RandomForestSolver |
Man page
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| show.RidgeSolver |
Man page
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| show.SpearmanSolver |
Man page
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| show.SqrtLassoSolver |
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| solve.BayesSpike |
Man page
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| solve.Ensemble |
Man page
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| solve.Lasso |
Man page
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| solve.LassoPV |
Man page
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| solve.Pearson |
Man page
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| solve.RandomForest |
Man page
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| solve.Ridge |
Man page
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| solve.Spearman |
Man page
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| solve.SqrtLasso |
Man page
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| trena-package |
Man page
|
