getRegulators: Retrieve the candiate regulators from a Solver object

Description Usage Arguments Value Examples

Description

Retrieve the candiate regulators from a Solver object

Usage

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## S4 method for signature 'Solver'
getRegulators(obj)

Arguments

obj

An object of class Solver

Value

The candidate regulators associated with a Solver object

Examples

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# Create a Solver object using the included Alzheimer's data and retrieve the regulators
load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
targetGene <- "MEF2C"
candidateRegulators <- setdiff(rownames(mtx.sub), targetGene)
solver <- Solver(mtx.sub, targetGene, candidateRegulators)
regs <- getRegulators(solver) 

PriceLab/trena-until-01mar2018 documentation built on May 25, 2019, 1:22 p.m.