Description Usage Arguments Value Examples
Retrieve the assay matrix of gene expression data from a Solver object
1 2 | ## S4 method for signature 'Solver'
getAssayData(obj)
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obj |
An object of class Solver |
The assay matrix of gene expression data associated with a Solver object
1 2 3 4 5 6 | # Create a Solver object using the included Alzheimer's data and retrieve the matrix
load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
targetGene <- "MEF2C"
candidateRegulators <- setdiff(rownames(mtx.sub), targetGene)
solver <- Solver(mtx.sub, targetGene, candidateRegulators)
mtx <- getAssayData(solver)
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