Description Usage Arguments Value See Also Examples
A GeneOntologyFilter object allows for filtering based on gene ontology (GO) terms. Its
associated getCandidates
method uses an organism database and a GO term (e.g. GO:#######)
to filter a list of possible regulators factors to those that match the GO term.
Create a CandidateFilter using Gene Ontology
1 2 | GeneOntologyFilter(organismDatabase = org.Hs.eg.db::org.Hs.eg.db,
GOTerm = "GO:0006351", quiet = TRUE)
|
organismDatabase |
An organism-specific database of type 'OrgDb' |
GOTerm |
A character matching an accepted gene ontology term. The default term corresponds to "transcription, DNA-templated". (default="GO:0006351") |
quiet |
A logical denoting whether or not the filter should print output |
A GeneOntologyFilter object
1 2 3 | # Make a filter for "transcription, DNA-templated"
library(org.Hs.eg.db)
goFilter <- GeneOntologyFilter(org.Hs.eg.db, GOTerm="GO:0006351")
|
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