Files in PriceLab/trena-until-01mar2018
Fit transcriptional regulatory networks using gene expression, priors, machine learning

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/BayesSpikeSolver.R R/CandidateFilter.R R/EnsembleSolver.R R/FootprintFilter.R R/FootprintFinder.R R/GeneOntologyFilter.R R/HumanDHSFilter.R R/LassoPVSolver.R R/LassoSolver.R R/MotifMatcher.R R/PearsonSolver.R R/RandomForestSolver.R R/RidgeSolver.R R/Solver.R R/SpearmanSolver.R R/SqrtLassoSolver.R R/Trena.R R/VarianceFilter.R R/help.R R/sharedFunctions.R R/utils.R README.md

_config.yml

inst/.DS_Store

inst/NEWS

inst/demos/.DS_Store

inst/demos/Assess_Distributions.ipynb

inst/demos/demoEnhancersDatabaseOnWhovian.R inst/demos/findPiez02RegulatorySnps.R inst/demos/findTFs.R inst/demos/runLassoSolver.R

inst/demos/test.png

inst/demos/trem2/go.R

inst/extdata/all_motifs.meme

inst/extdata/ampAD.154genes.mef2cTFs.278samples.RData

inst/extdata/ampAD.58genes.mef2cTFs.278samples.RData

inst/extdata/human.regulatory.genes.RData

inst/extdata/mef2c.neigborhood.hg38.footprints.db

inst/extdata/mef2c.neighborhood.hg38.gtfAnnotation.db

inst/extdata/motifGenes.tsv

inst/extdata/vrk2.neigborhood.hg38.footprints.db

inst/extdata/vrk2.neighborhood.hg38.gtfAnnotation.db

inst/extdata/yeast-53genes-536-samples.RData

inst/misc/.DS_Store

inst/misc/assessSnp.R inst/misc/createSQLiteDB.R

inst/misc/footprintFinding/piq/makefile

inst/misc/makeTRN-proximalanddistal-demo.R inst/misc/makeTRN-proximalonly-demo.R inst/misc/monteCarloTRN.R inst/misc/multiModels/aqp4-multi.R inst/misc/multiModels/aqp4.R inst/misc/multiModels/graphToJSON-devel.R

inst/misc/multiModels/style.js

inst/misc/profileDbQueries.R inst/misc/runTReNA-demo.R

inst/notes/fillEnhancerDatabase.txt

inst/prep/dream5.yeast/createTestData.R

inst/prep/dream5.yeast/net4_expression_data.tsv

inst/prep/dream5.yeast/net4_gene_ids.tsv

inst/prep/dream5.yeast/net4_transcription_factors.tsv

inst/prep/dream5.yeast/yeastGoldStandard.tsv

inst/utils/currentDBs.html

inst/utils/determineSqrtLambda.R inst/utils/evaluateAllSolvers.R inst/utils/extraFunctions.R inst/utils/runTReNA.R inst/utils/test_NaiveSolver.R inst/utils/test_TReNA.R inst/utils/test_runTReNA.R

man/.DS_Store

vignettes/TReNA_Vignette.html

PriceLab/trena-until-01mar2018 documentation built on May 25, 2019, 1:22 p.m.

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PriceLab/trena-until-01mar2018
Fit transcriptional regulatory networks using gene expression, priors, machine learning

Files in PriceLab/trena-until-01mar2018
Fit transcriptional regulatory networks using gene expression, priors, machine learning

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PriceLab/trena-until-01mar2018 Fit transcriptional regulatory networks using gene expression, priors, machine learning

Files in PriceLab/trena-until-01mar2018 Fit transcriptional regulatory networks using gene expression, priors, machine learning

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PriceLab/trena-until-01mar2018
Fit transcriptional regulatory networks using gene expression, priors, machine learning

Files in PriceLab/trena-until-01mar2018
Fit transcriptional regulatory networks using gene expression, priors, machine learning