API for PuttickMacroevolution/motmot
Models of Trait Macroevolution on Trees
| Global functions | |
|---|---|
| ML.RatePhylo | Man page Source code |
| RatePhylo.CI | Source code |
| RatePhylo.allCI | Man page Source code |
| addFossilToPhy | Man page Source code |
| allCladeMembers | Source code |
| allopatric.data | Man page |
| anolis.data | Man page |
| anolis.tree | Man page |
| ape2peth | Source code |
| as.rateData | Man page Source code |
| as.rateMatrix | Man page Source code |
| birthdeath_motmot | Source code |
| blomberg.k | Man page Source code |
| calcCutOff | Man page Source code |
| checktree | Source code |
| chr.disp.lrt | Man page Source code |
| chr.disp.param | Man page |
| chr.disp.sim | Man page Source code |
| contemporaryPhy | Man page Source code |
| dropTipPartial | Man page |
| fairProportions | Man page |
| finch.data | Man page |
| finch.tree | Man page |
| likRatePhylo | Man page Source code |
| likTraitPhylo | Man page |
| make.anc | Source code |
| make.likRatePhylo | Source code |
| mammals | Man page |
| mcmc.plot | Man page Source code |
| motmot | Man page |
| motmot-package | Man page |
| mu.mean | Source code |
| node.descendents | Man page |
| nodeTimes | Man page Source code |
| optim.likRatePhylo | Man page Source code |
| phyloCovar | Man page Source code |
| phyloMean | Man page Source code |
| phyloVar | Man page Source code |
| pic.pgls | Man page Source code |
| plot.timeSlice.ML | Man page Source code |
| plot.traitMedusa.model | Man page Source code |
| reml.lik | Source code |
| removeNonBin | Source code |
| reorder_data | Source code |
| sampleShid | Man page Source code |
| sig.sq | Source code |
| sliceTree | Source code |
| sortTraitData | Man page |
| summary.traitMedusa | Man page |
| summary_stats | Source code |
| symp_matrix | Source code |
| timeTravelPhy | Source code |
| traitData.plot | Man page Source code |
| transformPhylo | Man page |
| transformPhylo.MCMC | Man page Source code |
| transformPhylo.ML | Man page |
| transformPhylo.ll | Man page Source code |
| transformPhylo.sim | Man page Source code |
| transformRateMatrix | Man page Source code |
| vcv2edge.length | Source code |
| vectortime | Source code |
