dropTipPartial: Drop tips from a phylogenetic tree while preserving deleted...
In PuttickMacroevolution/motmot: Models of Trait Macroevolution on Trees

Description Usage Arguments Value Author(s) References See Also Examples

Wrapper for the ape function drop.tip that preserves the number of nodes affecting each branch. For use with the psi and multipsi models.

1	dropTipPartial(phy, tip)

`phy`	Phylogenetic tree in `phylo` format
`tip`	A vector of mode numeric or character specifying the tips to delete, to be passed to `drop.tip`

Phylogenetic tree in phylo format, with an added element Shid, a vector of numbers of observed but "missing" speciation events per branch, in the same order as the branches in the phylo object

Travis Ingram

Ingram, T. 2011. Speciation along a depth gradient in a marine adaptive radiation. Proc. R. Soc. B 278: 613-618.

transformPhylo.ML

## Read in phylogeny and data from Thomas et al. (2009)
data(anolis.tree)
data(anolis.data)
## identify tips to drop
tips.to.go <- anolis.tree$tip.label[1:30]
dropTipPartial(phy=anolis.tree, tip=tips.to.go)