Files in PuttickMacroevolution/motmot
Models of Trait Macroevolution on Trees
.DS_Store
.Rapp.history
DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/.Rhistory
R/ML.RatePhylo.R
R/RData.R
R/RDataTree.R
R/RData_finch_allopatric.R
R/RData_finch_data.R
R/RData_finch_tree.R
R/RData_mammals.R
R/RatePhylo.allCI.R
R/addFossilToPhy.R
R/as.rateData.R
R/as.rateMatrix.R
R/blomberg.k.R
R/calcCutOff.R
R/chr.disp.lrt.R
R/chr.disp.param.R
R/chr.disp.sim.R
R/chr.displacement_fun.R
R/contemporaryPhy.R
R/dropTipPartial.R
R/fairProportions.R
R/likRatePhylo.R
R/likTraitPhylo.R
R/mcmc.plot.R
R/motmot-package.R
R/node.descendents.R
R/nodeTimes.R
R/optim.likRatePhylo.R
R/phyloCovar.R
R/phyloMean.R
R/phyloVar.R
R/pic.pgls.R
R/plot.timeSlice.ML.R
R/plot.traitMedusa.model.R
R/sampleShid.R
R/sortTraitData.R
R/summary.traitMedusa.R
R/supplementary_fun.R
R/traitData.plot.R
R/transformPhylo.MCMC.R
R/transformPhylo.ML.R
R/transformPhylo.R
R/transformPhylo.ll.R
R/transformPhylo.sim.R
R/transformRateMatrix.R
README.md
data/.DS_Store
data/anolis.data.rda
data/anolis.tree.rda
data/finches.rda
man/ML.RatePhylo.Rd
man/RatePhylo.allCI.Rd
man/addFossilToPhy.Rd
man/allopatric.data.Rd
man/anolis.data.Rd
man/anolis.tree.Rd
man/as.rateData.Rd
man/as.rateMatrix.Rd
man/blomberg.k.Rd
man/calcCutOff.Rd
man/chr.disp.lrt.Rd
man/chr.disp.param.Rd
man/chr.disp.sim.Rd
man/contemporaryPhy.Rd
man/dropTipPartial.Rd
man/fairProportions.Rd
man/finch.data.Rd
man/finch.tree.Rd
man/likRatePhylo.Rd
man/likTraitPhylo.Rd
man/mammals.Rd
man/mcmc.plot.Rd
man/motmot-package.Rd
man/node.descendents.Rd
man/nodeTimes.Rd
man/optim.likRatePhylo.Rd
man/phyloCovar.Rd
man/phyloMean.Rd
man/phyloVar.Rd
man/pic.pgls.Rd
man/plot.timeSlice.ML.Rd
man/plot.traitMedusa.model.Rd
man/sampleShid.Rd
man/sortTraitData.Rd
man/summary.traitMedusa.Rd
man/traitData.plot.Rd
man/transformPhylo.MCMC.Rd
man/transformPhylo.ML.Rd
man/transformPhylo.Rd
man/transformPhylo.ll.Rd
man/transformPhylo.sim.Rd
man/transformRateMatrix.Rd
src/.DS_Store
src/.Rhistory
src/.gitignore
src/Rfunc.cpp
src/packagename_init.c
src/sim.cpp
src/sim.h
src/tree.cpp
src/tree.h
vignettes/.DS_Store
vignettes/.Rhistory
vignettes/figures/.DS_Store
vignettes/figures/plot1-1.png
vignettes/figures/plot10-1.png
vignettes/figures/plot11-1.png
vignettes/figures/plot12-1.png
vignettes/figures/plot2-1.png
vignettes/figures/plot3-1.png
vignettes/figures/plot4-1.png
vignettes/figures/plot5-1.png
vignettes/figures/plot6-1.png
vignettes/figures/plot7-1.png
vignettes/figures/plot8-1.png
vignettes/figures/plot9-1.png
vignettes/motmot.vignette.Rmd
vignettes/motmot.vignette.pdf
vignettes/motmot.vignette.pdf.Rmd
vignettes/motmot.vignette.pdf.pdf
