Files in PuttickMacroevolution/motmot

Models of Trait Macroevolution on Trees

R/ML.RatePhylo.R R/RData.R R/RDataTree.R R/RData_finch_allopatric.R R/RData_finch_data.R R/RData_finch_tree.R R/RData_mammals.R R/RatePhylo.allCI.R R/addFossilToPhy.R R/as.rateData.R R/as.rateMatrix.R R/blomberg.k.R R/calcCutOff.R R/chr.disp.lrt.R R/chr.disp.param.R R/chr.disp.sim.R R/chr.displacement_fun.R R/contemporaryPhy.R R/dropTipPartial.R R/fairProportions.R R/likRatePhylo.R R/likTraitPhylo.R R/mcmc.plot.R R/motmot-package.R R/node.descendents.R R/nodeTimes.R R/optim.likRatePhylo.R R/phyloCovar.R R/phyloMean.R R/phyloVar.R R/pic.pgls.R R/plot.timeSlice.ML.R R/plot.traitMedusa.model.R R/sampleShid.R R/sortTraitData.R R/summary.traitMedusa.R R/supplementary_fun.R R/traitData.plot.R R/transformPhylo.MCMC.R R/transformPhylo.ML.R R/transformPhylo.R R/transformPhylo.ll.R R/transformPhylo.sim.R R/transformRateMatrix.R README.md man/ML.RatePhylo.Rd man/RatePhylo.allCI.Rd man/addFossilToPhy.Rd man/allopatric.data.Rd man/anolis.data.Rd man/anolis.tree.Rd man/as.rateData.Rd man/as.rateMatrix.Rd man/blomberg.k.Rd man/calcCutOff.Rd man/chr.disp.lrt.Rd man/chr.disp.param.Rd man/chr.disp.sim.Rd man/contemporaryPhy.Rd man/dropTipPartial.Rd man/fairProportions.Rd man/finch.data.Rd man/finch.tree.Rd man/likRatePhylo.Rd man/likTraitPhylo.Rd man/mammals.Rd man/mcmc.plot.Rd man/motmot-package.Rd man/node.descendents.Rd man/nodeTimes.Rd man/optim.likRatePhylo.Rd man/phyloCovar.Rd man/phyloMean.Rd man/phyloVar.Rd man/pic.pgls.Rd man/plot.timeSlice.ML.Rd man/plot.traitMedusa.model.Rd man/sampleShid.Rd man/sortTraitData.Rd man/summary.traitMedusa.Rd man/traitData.plot.Rd man/transformPhylo.MCMC.Rd man/transformPhylo.ML.Rd man/transformPhylo.Rd man/transformPhylo.ll.Rd man/transformPhylo.sim.Rd man/transformRateMatrix.Rd vignettes/motmot.vignette.Rmd vignettes/motmot.vignette.pdf vignettes/motmot.vignette.pdf.Rmd vignettes/motmot.vignette.pdf.pdf