plot_brain: plot 3d brain network from JointNets result

In QData/JointNets: End-to-End Sparse Gaussian Graphical Model Simulation, Estimation, Visualization, Evaluation and Application

Description

This function plots 3d brain network from JointNets result

Usage

plot_brain(x, ...)

Arguments

x	output generated from any one of the JointNets functions
...	additional arguments, please see plot_brain.simule, plot_brain.wsimule and etc for details

Details

The function plots brain network using rglplot.igraph

Value

3d (rgl) brain network

Author(s)

Zhaoyang Wang (Author), Zhaoyang Wang (maintainer) [e-mail]

Examples

library(JointNets)
graphics.off()
par(ask=FALSE)
par(mfrow=c(1,1))
data(ABIDE_aal116_timeseries)
data(aal116coordinates)
layout = cbind(aal116coordinates$x.mni + 90,
aal116coordinates$y.mni+126, aal116coordinates$z.mni+72)
result = simulation(p=116, s = 0.001, ss = 0.001, n = c(1,1))$simulatedgraphs
class(result) = "simule"
plot_brain(result, type = "task", neighbouroption = "task",
subID = NULL, index = NULL, layout = layout, hasbackground = FALSE)

result = simule(ABIDE_aal116_timeseries, 0.2, 1, covType = "cov", FALSE)
plot_brain(result, type = "task", neighbouroption = "task",
subID = NULL, index = NULL, layout = layout)

QData/JointNets documentation built on Nov. 17, 2019, 3:04 p.m.