PTDO80: PTDO80
In Queen0044/scHiCBayes: Single cell HiC data imputation using Bayesian hierarchy model.
Description
Usage
Arguments
Value
Examples
Description
This function calculates PTDO when fix PTDO=0.80.
Usage
1
PTDO80(observed, expected, result)
Arguments
observed
Observed single cells matrix with each column being the upper triangular of a single cell.
expected
Underline true counts from simulation.
result
Result from MCMCImpute funtion.
Value
A vector of PTSZ and its SD when fixing PTDO to be 0.80, and the threshold used in that case.
Examples
1
PTDO80(observed=K562_T1_7k, expected=K562_1_true, result=T1_7k_res)
Queen0044/scHiCBayes documentation built on Dec. 18, 2021, 8:43 a.m.
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Description Usage Arguments Value Examples
Description
This function calculates PTDO when fix PTDO=0.80.
Usage
1 | PTDO80(observed, expected, result)
|
Arguments
observed |
Observed single cells matrix with each column being the upper triangular of a single cell. |
expected |
Underline true counts from simulation. |
result |
Result from MCMCImpute funtion. |
Value
A vector of PTSZ and its SD when fixing PTDO to be 0.80, and the threshold used in that case.
Examples
1 | PTDO80(observed=K562_T1_7k, expected=K562_1_true, result=T1_7k_res)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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