data-raw/expectedGeMetaDataColumns.R

In RGLab/ImmuneSignatures2: Pre-Processing for HIPC ImmuneSignatures2 Analysis

expectedGeMetaDataColumns <- c(
  "uid",
  "participant_id",
  "biosample_accession",
  "study_time_collected",
  "study_time_collected_unit",
  "time_post_last_vax",
  "unit_post_last_vax",
  "age_reported",
  "age_imputed",
  "gender",
  "race",
  "ethnicity",
  "exposure_material_reported",
  "exposure_process_preferred",
  "matrix",
  "gsm",
  "study_accession",
  "Hispanic",
  "White",
  "Asian",
  "Black",
  "cell_type",
  "cohort",
  "featureSetName",
  "featureSetName2",
  "featureSetVendor",
  "vaccine",
  "vaccine_type",
  "adjuvant",
  "pathogen",
  "arm_accession",
  "geBatchName",
  "irpBatchName"
)
usethis::use_data(expectedGeMetaDataColumns, overwrite = TRUE)