data-raw/yChromosomeGenes.R
In RGLab/ImmuneSignatures2: Pre-Processing for HIPC ImmuneSignatures2 Analysis
library(biomaRt)
mart <- useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl")
ychrom <- getBM(attributes = c("chromosome_name", "entrezgene_id", "hgnc_symbol"),
filters = "chromosome_name",
values = "Y",
mart = mart)
yChromGenes <- as.character(ychrom$hgnc_symbol)
yChromGenes <- yChromGenes[ !is.na(yChromGenes) & yChromGenes != "" ]
usethis::use_data(yChromGenes, overwrite = TRUE)
RGLab/ImmuneSignatures2 documentation built on Dec. 9, 2022, 10:51 a.m.
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library(biomaRt)
mart <- useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl")
ychrom <- getBM(attributes = c("chromosome_name", "entrezgene_id", "hgnc_symbol"),
filters = "chromosome_name",
values = "Y",
mart = mart)
yChromGenes <- as.character(ychrom$hgnc_symbol)
yChromGenes <- yChromGenes[ !is.na(yChromGenes) & yChromGenes != "" ]
usethis::use_data(yChromGenes, overwrite = TRUE)
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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