NEWS.md
In RGLab/MAST: Model-based Analysis of Single Cell Transcriptomics
1.5.3
Transition to use SingleCellExperiment and manage log counts slot.
Version 1.7.3
- Fixed a bug were weighted residuals weren't being returned, causing the residuals hook to fail.
- Fixed documentation and vignettes.
- Added CovFromBoots() API to return inter-gene covariance matrices for model coefficients from GSEA bootstraps.
- Added some files and directories to .Rbuildignore to address notes and warnings.
1.11.2
- Deprecated functions in version 1.8.0 are now Defunct.
filter (defunct since 1.8.0) has been removed. Use mast_filter now.
- Refactored the
FromMatrix constructor so that list-like assays don't make a roundtrip through an array. This allows sparse-matrix and HDF5-backed assays to be provided to the constructor.
- zlm gains an
exprs_value argument to allow the assay to be selected that will be tested.
1.25.1
- Fixed an issue in stat_ell
- Warn rather than error out if
zlm is called with bad dot args (https://github.com/satijalab/seurat/issues/6489)
RGLab/MAST documentation built on Sept. 30, 2023, 1:08 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
1.5.3
Transition to use SingleCellExperiment and manage log counts slot.
Version 1.7.3
- Fixed a bug were weighted residuals weren't being returned, causing the residuals hook to fail.
- Fixed documentation and vignettes.
- Added CovFromBoots() API to return inter-gene covariance matrices for model coefficients from GSEA bootstraps.
- Added some files and directories to .Rbuildignore to address notes and warnings.
1.11.2
- Deprecated functions in version 1.8.0 are now Defunct.
filter(defunct since 1.8.0) has been removed. Use mast_filter now. - Refactored the
FromMatrixconstructor so that list-like assays don't make a roundtrip through an array. This allows sparse-matrix and HDF5-backed assays to be provided to the constructor. - zlm gains an
exprs_valueargument to allow the assay to be selected that will be tested.
1.25.1
- Fixed an issue in stat_ell
- Warn rather than error out if
zlmis called with bad dot args (https://github.com/satijalab/seurat/issues/6489)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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