summary.thresholdSCRNACountMatrix: Summarize the effect of thresholding

In RGLab/MAST: Model-based Analysis of Single Cell Transcriptomics

Summarize the effect of thresholding

Description

Returns the proportion of (putative) expression, the variance of expressed cells, and -log10 shapiro-wilk tests for normality on the expressed cells

Usage

## S3 method for class 'thresholdSCRNACountMatrix'
summary(object, ...)

## S3 method for class 'summaryThresholdSCRNA'
print(x, ...)

Arguments

object	a thresholdSCRNACountMatrix
...	currently ignored
x	a summaryThresholdSCRNA object, ie output from summary.thresholdSCRNACountMatrix

Value

a list of statistics on the original data, and thresholded data

Functions

• print(summaryThresholdSCRNA): prints five-number distillation of the statistics and invisibly returns the table used to generate the summary

RGLab/MAST documentation built on Sept. 30, 2023, 1:08 p.m.