sce_to_gs: convert SingleCellExperiment to a GatingSet

In RGLab/cytoUtils: extending openCyto framework

convert SingleCellExperiment to a GatingSet

Description

note that only selected assay and rowData columns will be extracted into the GatingSet

Usage

sce_to_gs(
  sce,
  assay_type = "intensity",
  sample = "sample",
  channel = NA,
  marker = NA,
  ...
)

Arguments

sce	SingleCellExperiment object
assay_type	select assay to use
sample	select the column from colData to represent sample ID
channel	select the column from rowData to represent channels
marker	select the column from rowData to represent markers

RGLab/cytoUtils documentation built on Jan. 31, 2024, 11:26 p.m.