stimulationModel: Preparing a Dataset for a Stimulation Respone Analysis with...

In RGLab/flowReMix: Generalized Linear Modeling of FCM Data With Clustered Coefficients

Description

Given a dataset and a list of stimulation groups, the function pairs each stimulation group with control stimulations and defines a new cell_type variable which is the interaction of the previous cell type with stimulation group.

Usage

stimulationModel(data, cell_type, stim_var, controls, stim_groups)

Arguments

data	the data set to be transformed.
cell_type	a factor vector identifying which cell type each row in the data refers to.
stim_var	a vector identifying the which stimulation each row in the data refers to.
controls	a vector identifying which of the stimulations are controls.
stim_groups	a list detailing which stimulations are to be grouped together.

RGLab/flowReMix documentation built on May 8, 2019, 5:55 a.m.