Files in RGLab/flowReMix
Generalized Linear Modeling of FCM Data With Clustered Coefficients

.RData

.Rapp.history

.Rbuildignore

.gitignore

DESCRIPTION

Data Analysis/HVTN booleans.R Data Analysis/HVTN marginals.R Data Analysis/HVTN variability.R Data Analysis/RV144 booleans analysis subset.R Data Analysis/RV144 booleans analysis.R Data Analysis/RV144 booleans antibody.R Data Analysis/RV144 marginal data.R Data Analysis/RV144_boolean_cluster.R

Data Analysis/RV144_boolean_cluster.sbatch

Data Analysis/TBdata.R Data Analysis/analyzing rv144 variabiliy.R Data Analysis/booleans subject level analysis.R Data Analysis/carTagain.R Data Analysis/carTcells.R Data Analysis/comparison with MIMOSA.R Data Analysis/malaria dataset again B.R Data Analysis/malaria dataset again.R Data Analysis/malaria dataset.R Data Analysis/testing GLMER function.R

LICENSE

NAMESPACE

Notebooks/HVTNnotebook.Rmd

Notebooks/HVTNnotebook.nb.html

Notebooks/RV144notebook.Rmd

Notebooks/RV144notebook.nb.html

R/HCindex.R R/RcppExports.R R/aggregate.R R/oneStepBB.R R/raIsing.R R/reMixMisc.R R/rocFunctions.R R/simFunctions.R R/stabilityFunctions.R R/subsetResponseRcpp.R R/summaryFunctions.R R/utils.R README.md Simulations/flowsim.R

Simulations/results/simfit binomial.Robj

Simulations/results/simfit dispersed

Simulations/validating linear constraint CIs.R cluster/TBdat/TBcluster.R cluster/TBdat/TBclusterSep.R cluster/TBdat/TBfull.R

cluster/TBdat/TBfull.Rout

cluster/TBdat/TBfullB.R

cluster/TBdat/TBfullB.Rout

cluster/TBdat/TBnew.R cluster/TBdat/TBperm.R cluster/TBdat/tbStab.R

cluster/TBdat/tbStab.sbatch

cluster/TBdat/tbdat.sbatch

cluster/hvtn/505JointPrep.R cluster/hvtn/HVTNclusterFinalIsh.R cluster/hvtn/HVTNclusterWscreen.R

cluster/hvtn/hvtnPar.sbatch

cluster/hvtn/oldcode/HVTNcluster.R cluster/hvtn/oldcode/HVTNcluster30.R cluster/hvtn/oldcode/HVTNcluster60.R

cluster/hvtn/oldcode/HVTNclusterFinalIsh.Rout

cluster/hvtn/oldcode/fixHvtn.sbatch

cluster/hvtn/oldcode/fixResultsHvtn.R

cluster/hvtn/oldcode/flu_seir_v_t_d.sbatch

cluster/hvtn/oldcode/hvtnStab.sbatch

cluster/hvtn/oldcode/hvtnStability.R cluster/hvtn/oldcode/mem.R cluster/hvtn/oldcode/newsamp.R

cluster/malVaccine/flowout.out

cluster/malVaccine/malVaccine.R

cluster/malVaccine/malVaccine.Rout

cluster/malVaccine/malVaccine.sbatch

cluster/malVaccine/malVaccineInter.R

cluster/malVaccine/malVaccineInter.Rout

cluster/malVaccine/malVaccineNew.R

cluster/malaria/malaria.sbatch

cluster/malaria/malariaCluster.R cluster/malaria/malariaClusterNew.R cluster/malaria/malariaJack.R

cluster/malaria/malariaJack.sbatch

cluster/malaria/malariaNew.sbatch

cluster/malaria/malaria_small.R

cluster/malaria/malaria_small.Rout

cluster/malaria/smallMalaria.sbatch

cluster/malbool/malariaBool.R

cluster/malbool/malariaBool.Rout

cluster/malbool/malariaBoolSCREEN.R

cluster/malbool/malariaBoolSCREEN.Rout

cluster/malbool/malariaBool_visitno.R

cluster/malbool/malariaBool_visitno.Rout

cluster/malbool/malbool.sbatch

cluster/oneofive/105preparation.R

cluster/oneofive/buildR.Rout

cluster/oneofive/flowout.out

cluster/oneofive/oneofiveBySub.R

cluster/oneofive/oneofiveBySub.Rout

cluster/oneofive/oofBatch.sbatch

cluster/oneofive/oofStab.R

cluster/oneofive/oofStab.Rout

cluster/oneofive/oofStab.sbatch

cluster/rv144/RV144cluster.R cluster/rv144/RV144clusterNew.R cluster/rv144/fixResults.R cluster/rv144/rv144Boot.R

cluster/rv144/rv144Par.sbatch

cluster/rv144/rv144Stab.sbatch

cluster/rv144/rv144stab.R cluster/temporalofive/105temporalPrep.R cluster/temporalofive/tempOfive.R

cluster/temporalofive/tempofive.sbatch

cluster/temporalofive/tempofive_any_response.R cluster/temporalofive/tempofive_noVisitIntercept.R

flowReMix.Rproj

man/.Rapp.history

man/FlowReMixFromCOMPASSContainers.Rd man/aggregateModels.Rd man/degreeFromStringFun.Rd man/flowReMix.Rd man/flowReMixPFS.Rd man/flowReMix_control.Rd man/getIsing.Rd man/getPosteriors.Rd man/getSubsets.Rd man/hcIndex.Rd man/parser.Rd man/plot.Rd man/plotChordDiagram.Rd man/plotIsingGraph.Rd man/print.flowReMix.Rd man/stabilityGraph.Rd man/stimulationModel.Rd man/summary.Rd man/translateCOMPASStoflowReMixNames.Rd man/weightForPFS.Rd man/zeroPosteriorProbs.Rd porotypes/TB conditional permutation.R porotypes/beta probabilities.R porotypes/foreach and iterators.R porotypes/glmer experiment.R porotypes/lowCountDens.R porotypes/marignalEM with offset.R porotypes/monte carlo screening pval.R porotypes/multivariate GLMER mixture experiment.R porotypes/rank adjusted ising.R porotypes/rateweight.R porotypes/understanding cytof workflow.R

src/.gitignore

src/CppFlowSstepList_mc_vec.cpp

src/CppflowSstep.cpp

src/Makevars

src/RcppExports.cpp

src/flowReMix.h

src/lchoose.cpp

src/simRandomEffectCoordinate_mc.cpp

src/subsetAssignGibbs_mc.cpp

src/subsetResponse.cpp

src/weightedmean.cpp

tests/testthat.R tests/testthat/test_scores.R

RGLab/flowReMix documentation built on May 8, 2019, 5:55 a.m.

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RGLab/flowReMix
Generalized Linear Modeling of FCM Data With Clustered Coefficients

Files in RGLab/flowReMix
Generalized Linear Modeling of FCM Data With Clustered Coefficients

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RGLab/flowReMix Generalized Linear Modeling of FCM Data With Clustered Coefficients

Files in RGLab/flowReMix Generalized Linear Modeling of FCM Data With Clustered Coefficients

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We want your feedback!

RGLab/flowReMix
Generalized Linear Modeling of FCM Data With Clustered Coefficients

Files in RGLab/flowReMix
Generalized Linear Modeling of FCM Data With Clustered Coefficients