RGLab/flowStats
Statistical methods for the analysis of flow cytometry data

Package index
Search the RGLab/flowStats package
Functions
193
Source code
30
Man pages
37
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RGLab/flowStats: Statistical methods for the analysis of flow cytometry data
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API

API for RGLab/flowStats
Statistical methods for the analysis of flow cytometry data

Global functions
%in%,flowFrame,curv1Filter-method Man page
%in%,flowFrame,curv2Filter-method Man page
%in%,flowFrame,lymphFilter-method Man page
%in%,flowFrame,norm2Filter-method Man page
%in%,flowFrame,rangeFilter-method Man page
.LD Source code
.calcReference Source code
.centerFigure Source code
.checkChannel Source code
.checkFeatureNum Source code
.classifyFeatures Source code
.combTransMatrix Source code
.combinePriorsForChildNodes Source code
.ddirichlet Source code
.det Source code
.estimateHyperParameters Source code
.fcbMap Source code
.filterOutlier Source code
.getMinMaxRange Source code
.getSVD Source code
.getTranslationMatrix Source code
.graph_parent Source code
.mergePriors Source code
.normalizeGatingSet Source code
.padPriorToK Source code
.plotGPAprocess Source code
.plotWorkFlow Source code
.rotateOnly Source code
.translate Source code
.translateFeatures Source code
.useDivCluster Source code
.usingSVD Source code
BackGating Man page
ITN Man page
SimulateMixture Man page Source code
addName,curv1Filter,character-method Man page
addName,curv1Filter,logical-method Man page
addName,curv2Filter,character-method Man page
addName,curv2Filter,logical-method Man page
area.in.polygon Source code
autoGate Man page Source code
backGating Source code
best.match Source code
binByRef Man page Source code
calcPBChiSquare Man page Source code
calcPearsonChi Man page Source code
choose.nk Source code
combinations.itr Source code
combinePols Source code
comparativeNormalizationPlot Source code
compute.confidence Source code
computeOverlap Source code
curv1Filter Man page Source code
curv1Filter-class Man page
curv2Filter Man page Source code
curv2Filter-class Man page
curvPeaks Man page Source code
curvRegs Source code
density1d Man page Source code
density1d_simple Source code
dfltCounts Source code
drvkde Source code
ellipse Man page
extract.base.landmarks Source code
extract.landmarks Source code
extract.landmarksNC Source code
fdPar Man page
filter.lms Source code
flowClust2Prior Man page Source code
flowStats Man page
flowStats-package Man page
gateHasSufficientData Source code
gate_singlet Man page Source code
gau Source code
gaussNorm Man page Source code
getPeakRegions Source code
getProportions Source code
getRegions Source code
getSubsets Source code
gpaSet Man page Source code
hdMat Source code
iProcrustes Man page Source code
idFeatures Man page
idFeaturesByBackgating Man page Source code
landmarkMatrix Man page Source code
landmarkMatrixWithoutFilterResult Source code
landmarker Source code
lymphFilter Man page Source code
lymphFilter-class Man page
lymphGate Man page Source code
match.all.lms Source code
match.score Source code
mkPrior Man page
mkPrior,list,flowSet,ANY,missing-method Man page
mkPrior,list,flowSet,missing,missing-method Man page
mkPrior,missing,flowFrame,missing,missing-method Man page
mkPrior,missing,flowSet,ANY,missing-method Man page
mkPrior,polygonGate,flowFrame,missing,missing-method Man page
mkPrior,polygonGate,flowFrame,numeric,matrix-method Man page
mkPrior,rectangleGate,flowFrame,missing,missing-method Man page
mkPrior,rectangleGate,flowFrame,numeric,matrix-method Man page
norm2Filter Man page Source code
norm2Filter-class Man page
normApprox Source code
normQA Man page Source code
normalize Man page
normalize,GatingSet,missing-method Man page
normalize,GatingSetInternal,missing-method Man page
normalize-methods Man page
normalize.one.expr Source code
normalize.one.exprNC Source code
oneDGate Man page Source code
overton_like Man page Source code
peakSeparator Source code
plotAllGates Source code
plotBins Man page Source code
plotPrior Man page Source code
plotSameGate Source code
plotting Source code
print.GPA Source code
proBin Man page Source code
pruneRegions Source code
quadrantGate Man page Source code
rangeFilter Man page Source code
rangeFilter-class Man page
rangeGate Man page Source code
register.channel Source code
register.function Source code
remBoundary Source code
remBoundaryNC Source code
restoreBoundary Source code
restoreBoundaryNC Source code
returny Source code
score.lms Source code
show,curv1Filter-method Man page
show,curv2Filter-method Man page
show,norm2Filter-method Man page
singletGate Man page
spillover Man page
spillover,flowSet-method Man page
spillover-flowSet Man page
spillover_match Man page
spillover_match,flowSet-method Man page
spillover_match,missing-method Man page
spillover_match-flowSet Man page
spillover_ng Man page
spillover_ng,flowSet-method Man page
spillover_ng,missing-method Man page
spillover_ng-flowSet Man page
summarizeFilter,multipleFilterResult,curv1Filter-method Man page
summarizeFilter,multipleFilterResult,curv2Filter-method Man page
symconv2D.ks Source code
symconv3D.ks Source code
symconv4D.ks Source code
warpSet Man page Source code
warpSet.GatingSet Source code
warpSet.cytoset Man page Source code
warpSet.default Source code
warpSet.flowSet Source code
warpSet.ncdfFlowSet Source code
warpSetGS Man page
warpSetNCDF Man page
warpSetNCDFLowMem Man page
RGLab/flowStats documentation built on July 20, 2023, 1:33 a.m.

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