gh_generate_template: generate a partially complete csv template from the existing...
In RGLab/openCyto: Hierarchical Gating Pipeline for flow cytometry data
View source: R/csvTemplate-parser.R
gh_generate_template R Documentation
generate a partially complete csv template from the existing gating hierarchy
Description
To ease the process of replicating the existing (usually a manual one) gating schemes,
this function populate an empty gating template with the 'alias', 'pop', 'parent' and 'dims'
columns that exacted from an GatingHierarchy, and leave the other columns (e.g. 'gating_method') blank.
So users can make changes to that template instead of writing from scratch.
Usage
gh_generate_template(gh)
Arguments
gh
a GatingHierarchy likely parsed from a xml workspace
Value
a gating template in data.frame format that requires further edition after output to csv
Examples
library(flowWorkspace)
dataDir <- system.file("extdata",package="flowWorkspaceData")
gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
gh_generate_template(gs[[1]])
RGLab/openCyto documentation built on Nov. 7, 2024, 9:23 p.m.
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View source: R/csvTemplate-parser.R
| gh_generate_template | R Documentation |
generate a partially complete csv template from the existing gating hierarchy
Description
To ease the process of replicating the existing (usually a manual one) gating schemes,
this function populate an empty gating template with the 'alias', 'pop', 'parent' and 'dims'
columns that exacted from an GatingHierarchy, and leave the other columns (e.g. 'gating_method') blank.
So users can make changes to that template instead of writing from scratch.
Usage
gh_generate_template(gh)
Arguments
gh |
a |
Value
a gating template in data.frame format that requires further edition after output to csv
Examples
library(flowWorkspace)
dataDir <- system.file("extdata",package="flowWorkspaceData")
gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
gh_generate_template(gs[[1]])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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