gt_toggle_helpergates: toggle/delete the hidden flag of the helper gates

In RGLab/openCyto: Hierarchical Gating Pipeline for flow cytometry data

toggle/delete the hidden flag of the helper gates

Description

The helper gates are defined as the referred gates in csv template. And all the chidlren of referred gates are also referred gates thus they are considered the helper gates and can usually be hidden to simply the final gating tree.

Usage

gt_toggle_helpergates(gt, gs)

gt_get_helpergates(gt, gs)

gt_delete_helpergates(gt, gs)

Arguments

gt	gatingTemplate object
gs	GatingSet

Details

Note that delete action is NOT reversible.

Examples

## Not run: 
gt <- gatingTemplate(gtFile)
#run the gating
gt_gating(gt, gs)
#hide the gates that are not of interest
gt_toggle_helpergates(gt, gs) 
#or simply remove them if you are sure they will not be useful in future
gt_delete_helpergates(gt, gs) 

## End(Not run)

RGLab/openCyto documentation built on Aug. 23, 2023, 6:53 a.m.