Files in RJ333/phyloseq2ML
Connects Phyloseq To Ranger And Keras
.Rbuildignore
.gitignore
.gitlab-ci.yml
DESCRIPTION
Dockerfile
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/data.R
R/filter_taxa_functions.r
R/initialize_machine_learning.r
R/keras_classification.R
R/keras_prepare_functions.r
R/keras_regression.R
R/merged_list_functions.r
R/modify_phyloseq_functions.r
R/ranger_classification.R
R/ranger_regression.r
R/sample_data_functions.r
R/sysdata.rda
R/taxonomy_level_functions.r
R/utilities.r
R/utils-pipe.R
README.md
data/TNT_communities.rda
environment.yml
example_workflow/example_workflow.r
example_workflow/oversampling_assessment.r
man/TNT_communities.Rd
man/add_sample_data.Rd
man/add_unique_lineages.Rd
man/augment.Rd
man/augment_and_noise.Rd
man/build_the_model.Rd
man/categoric_to_factor.Rd
man/categorize.Rd
man/categorize_response_variable.Rd
man/classification_metrics.Rd
man/create_community_table_subsets.Rd
man/create_taxonomy_lookup.Rd
man/dummify_input_tables.Rd
man/extract_parameters.Rd
man/extract_response_variable.Rd
man/filter_subsets.Rd
man/initialize_results.Rd
man/inputtables_to_keras.Rd
man/is.dummy.Rd
man/is.wholenumber.Rd
man/keras_classification.Rd
man/keras_regression.Rd
man/merge_input_response.Rd
man/otu_table_to_df.Rd
man/pipe.Rd
man/prediction_accuracy.Rd
man/ranger_classification.Rd
man/ranger_regression.Rd
man/scaling.Rd
man/split_data.Rd
man/standardize_phyloseq_headers.Rd
man/store_classification.Rd
man/store_classification_results.Rd
man/store_regression.Rd
man/store_regression_results.Rd
man/to_relative_abundance.Rd
man/translate_ID.Rd
package_development/Important_devtools_functions.r
tests/testthat.R
tests/testthat/test-filter_subsets.R
tests/testthat/test-initialize_machine_learning.r
tests/testthat/test-keras_classification.r
tests/testthat/test-keras_prepare.r
tests/testthat/test-keras_regression.r
tests/testthat/test-merged_list_functions.r
tests/testthat/test-modify_phyloseq.R
tests/testthat/test-sample_data_functions.r
tests/testthat/test-taxonomy_level_functions.r
tests/testthat/test-utilities.r
tests/testthat/test_ranger_classification.r
tests/testthat/test_ranger_regression.r
vignettes/.gitignore
vignettes/Keras_classification.Rmd
vignettes/Keras_regression_multiclass.Rmd
vignettes/Phyloseq2ML-vignette.Rmd
vignettes/Prepare_phyloseq_for_Machine_Learning.Rmd
vignettes/Ranger_classification.Rmd
vignettes/Ranger_regression.Rmd
