download_UKB_LD: Download UKB LD

In RajLabMSSM/echoLD: echoverse module: LD downloading and processing

Download UKB LD

Description

Download UK Biobank Linkage Disequilibrium, pre-computed in 3Mb windows by the Alkes Price lab (Broad Institute).

Usage

download_UKB_LD(
  LD.prefixes,
  locus_dir,
  bucket = "s3://broad-alkesgroup-ukbb-ld/",
  background = TRUE,
  force_overwrite = FALSE,
  nThread = 1,
  verbose = TRUE,
  ...
)

Arguments

locus_dir	Storage directory to use.
bucket	Character string with the name of the bucket, or an object of class “s3_bucket”.
force_overwrite	Overwrite existing file.
nThread	Number of threads to parallelize over.
verbose	Print messages.
...	Arguments passed on to downloadR::aws input_url URL to remote file. output_path The file name you want to save the download as.

RajLabMSSM/echoLD documentation built on May 12, 2024, 3:23 a.m.