snpstats_get_MAF: Get MAF using 'snpStats' package

In RajLabMSSM/echoLD: echoverse module: LD downloading and processing

Get MAF using snpStats package

Description

Get MAF using snpStats package

Usage

snpstats_get_MAF(query_dat, ss, force_new_maf = FALSE, verbose = TRUE)

Arguments

LD_folder

Locus-specific LD output folder.

Source

snpStats Bioconductor page

See Also

Other LD: check_population_1kg(), compute_LD(), filter_LD(), get_LD(), get_LD_1KG(), get_LD_1KG_download_vcf(), get_LD_UKB(), get_LD_matrix(), get_LD_vcf(), get_locus_vcf_folder(), ldlinkr_ldproxy_batch(), plot_LD(), popDat_1KGphase1, popDat_1KGphase3, rds_to_npz(), saveSparse(), save_LD_matrix()

RajLabMSSM/echoLD documentation built on May 12, 2024, 3:23 a.m.