readSparse: Read LD matrix

In RajLabMSSM/echoLD: echoverse module: LD downloading and processing

Read LD matrix

Description

Read in an LD matrix stored in a variety of file formats, and convert it to a sprase matrix.

Usage

readSparse(LD_path, as_sparse = TRUE, as_df = FALSE, verbose = TRUE, ...)

Arguments

LD_path	Path to LD matrix.
as_sparse	Convert the LD matrix to a sparse matrix.
as_df	Convert to the matrix to a data.frame.
verbose	Print messages.
...	Arguments passed on to downloadR::load_rdata fileName Name of the file to load.

Examples

LD_path <- tempfile(fileext = ".csv")
utils::write.csv(echodata::BST1_LD_matrix,
                 file = LD_path,
                 row.names = TRUE)
ld_mat <- readSparse(LD_path = LD_path)

RajLabMSSM/echoLD documentation built on May 12, 2024, 3:23 a.m.