R/XGR_plot_style.R

In RajLabMSSM/echoplot: echoverse module: Locus plot creation for fine-mapping and colocalization studies

XGR_plot_style <- function(xgr_track,
                           gr.filt,
                           lib_name,
                           colors) {
    
    requireNamespace("ggplot2") 
    #### further modify #### 
    trk_name <- paste("XGR:", lib_name)
    xgr_track <- suppressMessages(
        xgr_track +
            ggplot2::theme_classic() +
            ggplot2::theme(
                strip.text.y = ggplot2::element_text(angle = 0),
                strip.text = ggplot2::element_text(size = 9)
            ) +
            ggplot2::scale_fill_manual(values = colors) +
            ggplot2::scale_y_continuous(n.breaks = 3) +
            ggplot2::guides(fill = ggplot2::guide_legend(
                ncol = 2,
                keyheight = .5,
                keywidth = .5
            )) +
            ggplot2::labs(y = paste(gsub("_", " ", trk_name), 
                                    "\n", "density"))
    )
    return(xgr_track)
}