#' liv S4 Object
#'
#' This class is used to store and further analyze the results of the liv function
#' @slot formula
#' @slot coefficients
#' @slot seCoefficients
#' @slot groupMeans
#' @slot seMeans
#' @slot sigma
#' @slot probG1
#' @slot seProbG1
#' @slot initValues
#' @slot value
#' @slot convCode
#' @slot hessian
#' @name liv-class
#' @rdname liv-class
#' @exportClass liv
#'
#' @examples
#' getSlots("liv")
#'
#' @importFrom methods setClass
#' @export
setClass(
#Class name
"liv",
#Slots / member vars
slots = c(
formula = "formula",
coefficients = "numeric",
seCoefficients = "numeric",
groupMeans = "numeric",
seMeans = "numeric",
sigma = "matrix",
probG1 = "numeric",
seProbG1 = "numeric",
initValues = "numeric",
value = "numeric",
convCode = "integer",
hessian = "matrix"
),
prototype = list(formula = NA,
coefficients = NA_real_,
seCoefficients = NA_real_,
groupMeans = NA_real_,
seMeans = NA_real_,
sigma = matrix(NA),
probG1 = NA_real_,
initValues = NA_real_,
value = NA_real_,
convCode = NA_integer_,
hessian = matrix(NA)
)
)
#' S3 Method for LIV object for generic "coef"
#'@param object an object of class "liv", usually, a result of a call to liv().
#'@param ... further arguments passed to or from other methods.
#'@export
coef.liv <- function(object, ...)
{print(object@coefficients)}
#' S3 Method for liv object for generic "summary"
#'@param object an object of class "liv", usually, a result of a call to liv().
#'@param ... further arguments passed to or from other methods.
#'@export
summary.liv <- function(object, ...)
{
z <- object
est <- z@coefficients # estimates value
se <- z@seCoefficients # standard errors
names.coef <- all.vars(z@formula[[3]])
coef.table <- cbind(est,se)
colnames(coef.table) <- c("Estimate","Std. Error")
rownames(coef.table) <- c("Intercept",names.coef)
cat("\nCoefficients:\n")
printCoefmat(coef.table) # print the coefficient and std errors
cat("\nInitial Parameter Values:\n", z@initValues) # print initial param values
cat("\n")
cat("\nThe Value of the log likelihood function:\n", z@value) # print logLik values
cat("\n")
cat("\nConvergence Code:\n", z@convCode) # print comvergence code
}
#' S3 Method for liv object for generic "print"
#'@param x an object of class "liv", usually, a result of a call to liv().
#'@param ... further arguments passed to or from other methods.
#'@export
print.liv <- function(x, ...)
{
str(x)
# str(object)
}
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