FC.score: Functional Coherence Score

In RicUIB/AligNet: Tool to Analyze PPI Networks and Align Networks using AligNet Algorithm algorithm

Description

Given an alignment g:V_1 \rightarrow V_2, and an ontologies gos, then the functional coherence score is defined as:

\frac{1}{|V_1|} ∑_{v \in V_1} \frac{|gos(v) \cap gos(g(v))|} {|gos(v)\cup gos(g(v))|}

Usage

FC.score(alin, gos)

Arguments

alin	alignment, with the format of alin.local or alin.global
gos	a list of ontologies

Value

FC score

RicUIB/AligNet documentation built on May 28, 2019, 2:27 p.m.