Man pages for RicUIB/AligNet
Tool to Analyze PPI Networks and Align Networks using AligNet Algorithm algorithm

align.endEnd alignment
align.globalGlobal Alignment of two Protein Interaction Network
align.localLocal alignment
align.local.allAll local alignments
align.local.plotLocal alignment plot plot a local alignment and all the local...
align.plotPlot the alignment
aligns.updateUpdate aligns
alin_auxalin_aux
buildBlastNo funciona
cluster.networkCluster Network
computeICIC
compute.matrixCompute Matrix
compute.matrix.BlastNo funciona
compute.matrix.DegreeDegree
compute.matrix.DistanceDistance
compute.matrix.DSDDSD
compute.matrix.FCFC
compute.scoreCompute score
cont.typeCont type
display.clustersDisplay Clusters
dmeProtein protein interaction network of dme
dme-dmeSimilarity matrix between proteins of dme
dme-sceSimilarity matrix between proteins of dme and sce
EC.scoreEdge Correctness Score
EC.score.allEdges score
extract.clustersExtract clusters
FC.scoreFunctional Coherence Score
get.alignsget aligns
goA list of go
HungarianFinalHungarian
hypergraph.solveSolve hypergraph
internalA list of alignments for the vignette
is.element2is.element2
matrix.updateUpdate Matrix
net1Protein Interaction Network
net2Protein Interaction Network
read.matrixRead Matrix
read.matrix.col3Intern
read.matrix.RDataIntern
read.matrix.tableIntern
read.networkRead Network
read.network.edgesNetwork edges
read.network.tabNetwork tab
remove.globalremove global
sceProtein protein interaction network of sce
sce-sceSimilarity matrix between proteins of sce
search.alignsSearch alignments Search alignments in als from p1 to p2
select.alignsSelect alignments
SimExample of similarity network
Sim1Example of similarity network
Sim2Example of similarity network
sim.scoresimScore.aux
sim.score.allSimilarity Score
size.score.allSize score
splitBIOGRIDsplit BIOGRID
splitDIPsplit DIP
splitgenesplit gene
splitrefseqsplit refseq
splituniprotsplit uniprot
RicUIB/AligNet documentation built on Nov. 18, 2017, 8:54 a.m.