# sim.score.all: Similarity Score In RicUIB/AligNet: Tool to Analyze PPI Networks and Align Networks using AligNet Algorithm algorithm

## Description

Compute the similarity score of the list of local alignments. Given an alignment g:V_1\rightarrow V_2, and a similarity matrix sim, the similarity score of the alignment g is defined as:

\frac{1}{|V_1|} ∑_{v \in V_1} sim[v,g(v)]

## Usage

 1 sim.score.all(localAligns, sim) 

## Arguments

 localAligns a list of local alignments sim a similarity matrix

## Value

simScore a table with 3 columns, the first and second ones represents the local alignment and the third the score of alignment

RicUIB/AligNet documentation built on May 28, 2019, 2:27 p.m.