Description Usage Arguments Value
Compute the similarity score of the list of local alignments. Given an alignment g:V_1\rightarrow V_2, and a similarity matrix sim, the similarity score of the alignment g is defined as:
\frac{1}{|V_1|} ∑_{v \in V_1} sim[v,g(v)]
1 | sim.score.all(localAligns, sim)
|
localAligns |
a list of local alignments |
sim |
a similarity matrix |
simScore a table with 3 columns, the first and second ones represents the local alignment and the third the score of alignment
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