Description Usage Arguments Details
Given a cluster matrix, see cluster.network
and a network
display the cluster matrix with the following colors for the position (i,j):
1 2 |
clust |
a matrix which is the output1 of |
Net |
an igraph object |
zoom |
an integer to define the size of plot or NA, to plot all clusters |
type |
0 = "yellow", 1 = "black", 2="red", 3 = "green" |
cols |
a list of 4 colors if you want to change the default colors |
col |
color to use with zoom |
... |
Additional plotting parameters |
- Yellow if the protein and protein i doesn't belongs to cluster of protein j and proteins don't interact in the network
- Black if the protein and protein i belongs to cluster of protein j but proteins don't interact in the network
- Red if the protein and protein i doesn't belongs to cluster of protein j but proteins interact in the network
- Green if the protein and protein i belongs to cluster of protein j and proteins interact in the network
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