plotConv: Plot function for nestorFit convergence
In Rmomal/nestor: Network inference from Species counTs with missing actORs
Description
Usage
Arguments
Value
Examples
Description
Plot function for nestorFit convergence
Usage
1
Arguments
nestorFit
Fit from the nestorFit() function.
Value
Visualiaztion of nestorFit convergence.
Examples
1
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data=generate_missing_data(n=100,p=10,r=1,type="scale-free", plot=FALSE)
PLNfit<-norm_PLN(data$Y)
MO<-PLNfit$MO
SO<-PLNfit$SO
sigma_O=PLNfit$sigma_O
#-- use true clique for example
initClique=data$TC
#-- initialize the VEM
initList=initVEM(cliqueList=initClique,sigma_O, MO,r=1 )
nestorFit=nestorFit(MO,SO, initList=initList, maxIter=3 , verbatim=1)
#-- obtain criteria
plotConv(nestorFit)
Rmomal/nestor documentation built on Dec. 16, 2020, 7:54 p.m.
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Description Usage Arguments Value Examples
Description
Plot function for nestorFit convergence
Usage
1 |
Arguments
nestorFit |
Fit from the nestorFit() function. |
Value
Visualiaztion of nestorFit convergence.
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | data=generate_missing_data(n=100,p=10,r=1,type="scale-free", plot=FALSE)
PLNfit<-norm_PLN(data$Y)
MO<-PLNfit$MO
SO<-PLNfit$SO
sigma_O=PLNfit$sigma_O
#-- use true clique for example
initClique=data$TC
#-- initialize the VEM
initList=initVEM(cliqueList=initClique,sigma_O, MO,r=1 )
nestorFit=nestorFit(MO,SO, initList=initList, maxIter=3 , verbatim=1)
#-- obtain criteria
plotConv(nestorFit)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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