plotPerf: Comparaitve plot of estimated edge probabilities and original...

In Rmomal/nestor: Network inference from Species counTs with missing actORs

Description

Comparaitve plot of estimated edge probabilities and original graph.

Usage

plotPerf(P, G, r, thresh = 0.5, no.names = FALSE)

Arguments

P	Edges probabilities matrix.
G	Adjacency matrix of the original graph.
r	Number of missing actors.
thresh	Required threshold for criteria computations, default to 0.5.
no.names	Boolean controlling the display of variable names and ticks.

Value

Two heatmaps with performance criteria computed for the specified threshold as title.

Examples

data=generate_missing_data(n=100,p=10,r=1,type="scale-free", plot=FALSE)
PLNfit<-norm_PLN(data$Y)
MO<-PLNfit$MO
SO<-PLNfit$SO
sigma_O=PLNfit$sigma_O
#-- use true clique for example
initClique=data$TC
#-- initialize the VEM
initList=initVEM(cliqueList=initClique,sigma_O, MO,r=1 )
nestorFit=nestorFit(MO,SO, initList=initList, maxIter=3,verbatim=1 )
#-- obtain criteria
plotPerf(nestorFit$Pg, data$G,r=1)

Rmomal/nestor documentation built on Dec. 16, 2020, 7:54 p.m.