get-Samples-character-method: Get specific parameter samples and produce a data.frame

In Roche/crmPack: Object-Oriented Implementation of CRM Designs

Get specific parameter samples and produce a data.frame

Description

Here you have to specify with pos which parameter you would like to extract from the Samples object

Usage

## S4 method for signature 'Samples,character'
get(x, pos = -1L, envir = NULL, mode = NULL, inherits = NULL)

Arguments

x	the Samples object
pos	the name of the parameter
envir	for vectorial parameters, you can give the indices of the elements you would like to extract. If NULL, the whole vector samples will be returned
mode	not used
inherits	not used

Value

the data frame suitable for use with ggmcmc

Examples

# nolint start

# Create some data
data <- Data(x = c(0.1, 0.5, 1.5, 3, 6, 10, 10, 10),
             y = c(0, 0, 0, 0, 0, 0, 1, 0),
             cohort = c(0, 1, 2, 3, 4, 5, 5, 5),
             doseGrid = c(0.1, 0.5, 1.5, 3, 6,
                          seq(from = 10, to = 80, by=2)))

# Initialize a model 
model <- LogisticLogNormal(mean = c(-0.85, 1),
                           cov = matrix(c(1, -0.5, -0.5, 1), nrow = 2),
                           ref_dose = 56)

# Get posterior for all model parameters
options <- McmcOptions(burnin = 100,
                       step = 2,
                       samples = 2000)
set.seed(94)
samples <- mcmc(data, model, options)

# now extract the alpha0 samples (intercept of the regression model)
alpha0samples <- get(samples, "alpha0")

# nolint end

Roche/crmPack documentation built on April 30, 2024, 3:19 p.m.